Bioinformatics生物信息专业相关网址

Leo Lee's Website Bank

• 个人收藏目录及分享

• • 编程及代码相关(Code Compilation Related)
  • 图表制作相关(Illustration Fabricating Related)
  • 生物知识学习相关(Learning Related)
  • 论文获取及发表相关(Paper Related)
  • 其他(Others)

• 国内外生信数据库Link汇总

• 国外耗材采购网址Link汇总

• 国外生物技术公司Link汇总

• 国内生物技术公司Link汇总

个人收藏目录及分享

这是我在学习和研究过程中收藏的实用网址，分享给大家！
若有错误或补充，欢迎大家积极留言~

Last Updated：2021.06.15 Tue.
—————————————————————————————

编程及代码相关(Code Compilation Related)

代码题库与练习 LeetCode A Platform to Enhance Skills, Expand Knowledge and Prepare for Technical Interviews: LeetCode: leetcode.com.

LeetCode is the best platform to help you enhance your skills, expand your knowledge and prepare for technical interviews.

单细胞测序分析工具 Seurat Tools for Single Cell Genomics: Seurat: satijalab.org/seurat.

Seurat is an R package designed for QC, analysis, and exploration of single-cell RNA-seq data. Seurat aims to enable users to identify and interpret sources of heterogeneity from single-cell transcriptomic measurements, and to integrate diverse types of single-cell data.

单细胞测序分析工具 Monocle3 An analysis toolkit for single-cell RNA-seq: Monocle3 cole-trapnell-lab.github.io/monocle3.

Single-cell transcriptome sequencing (sc-RNA-seq) experiments allow us to discover new cell types and help us understand how they arise in development. The Monocle 3 package provides a toolkit for analyzing single-cell gene expression experiments.

数据科学教程 Data Novia Data Science Tutorial: Data Novia: www.datanovia.com/en.

DataNovia is dedicated to data mining and statistics to help you make sense of your data. We offer data science courses on a large variety of topics, including: R programming, Data processing and visualization, Biostatistics and Bioinformatics, and Machine learning.

—————————————————————————————

图表制作相关(Illustration Fabricating Related)

免费矢量图标 Flaticon Free Vector Icons: Flaticon: www.flaticon.com.

The largest database of free icons available in PNG, SVG, EPS, PSD and BASE 64 formats.

专业科学图注创作 BioRender Create Professional Science Figures (Charged) : BioRender: biorender.com.

With 100s of customizable templates from expert science designers, making a figure has never been easier.

韦恩图制作 Venny Making Venn Diagrams: Venny: bioinfogp.cnb.csic.es/tools/venny/index.html.

—————————————————————————————

生物知识学习相关(Learning Related)

基因科学学习中心 Learn.Genetics Genetic Science Learning Center: Learn.Genetics: learn.genetics.utah.edu.

—————————————————————————————

论文获取及发表相关(Paper Related)

越权限获取研究论文 SCI Hub Provide Mass & Public Access to Research Papers: SCI Hub: sci-hub.se.

the first website in the world to provide mass & public access to research papers.

相关论文可视化 Connected Papers Explore Connected Papers in a Visual Graph: Connected Papers: www.connectedpapers.com.

Explore connected papers in a visual graph.

论文投稿杂志建议 Springer Journal Suggester Journal Suggester: Springer Journal Suggester: journalsuggester.springer.com.

Enter your manuscript details to see a list of journals most suitable for your research.

—————————————————————————————

其他(Others)

生物信息在线分析 SangerBox: SangerBox: sangerbox.com/Index.

让科研小白也能做生物信息学分析。

全面的PDF处理工具 iLovePDF Tools Working with PDFs in One Place: iLovePDF: www.ilovepdf.com/zh-cn.

完全免费、易于使用、丰富的PDF处理工具，包括：合并、拆分、压缩、转换、旋转和解锁PDF文件，以及给PDF文件添加水印的工具等。仅需几秒钟即可完成。
Every tool you need to use PDFs, at your fingertips. All are 100% FREE and easy to use! Merge, split, compress, convert, rotate, unlock and watermark PDFs with just a few clicks.

乱码恢复 www.mytju.com.

可以将乱码恢复成原字符，提供多种编码之间的转换而且不必选择，傻瓜式操作，只需输入乱码一键输出各种对应编码逆转换。

英语词源辞典 Online Etymology Dictionary Origin, History and Meaning of English Words: Online Etymology Dictionary: www.etymonline.com.

This is a map of the wheel-ruts of modern English. Etymologies are not definitions; they’re explanations of what our words meant and how they sounded 600 or 2,000 years ago.

检查英文语法错误 Grammarly Grammar Check: Grammarly: www.grammarly.com/grammar-check.

Check your English text for grammar, spelling, and punctuation errors with Grammarly’s free grammar checker.

英文近反义词查询 TheSaurus Synonyms and Antonyms of Words: TheSaurus: www.thesaurus.com.

免费TPO在线做 托福威学: 托福威学: t.weixue100.com/toefl/default/guest.

全真测练系统，基于大数据的智能分析和智能推题。个性化学习分析，系统课程专业辅导，让学习效率事半功倍。

—————————————————————————————

国内外生信数据库Link汇总

GEO Gene Expression Omnibus: GEO: www.ncbi.nlm.nih.gov/geo.

GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles.

GDC Genomic Data Commons Data Portal(TCGA入口): GDC: portal.gdc.cancer.gov.

The GDC Data Portal is a robust data-driven platform that allows cancer
researchers and bioinformaticians to search and download cancer data for analysis.

GTEx The Genotype-Tissue Expression (GTEx): GTEx: www.gtexportal.org/home/.

The Genotype-Tissue Expression (GTEx) project is an ongoing effort to build a comprehensive public resource to study tissue-specific gene expression and regulation. Samples were collected from 54 non-diseased tissue sites across nearly 1000 individuals, primarily for molecular assays including WGS, WES, and RNA-Seq. Remaining samples are available from the GTEx Biobank. The GTEx Portal provides open access to data including gene expression, QTLs, and histology images.

GSA Genome Sequence Archive (GSA): GSA: bigd.big.ac.cn/gsa/.

组学原始数据归档库（Genome Sequence Archive）是组学原始数据汇交、存储、管理与共享系统，是国内首个被国际期刊认可的组学数据发布平台。
The Genome Sequence Archive (GSA) is a data repository for archiving raw sequence reads. It accepts data submissions from all over the world and provides free access to all publicly available data for global scientific communities.

UCSC Xena University of California SANTA CRUZ: UCSC Xena: xena.ucsc.edu/.

An online exploration tool for public and private, multi-omic and clinical/phenotype data

BindingDB A Database of Interactions of Protein Considered to be Drug-Targets with Small, Drug-Like Molecules.: BindingDB: www.bindingdb.org/bind/index.jsp.

BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules.

PanglaoDB A Database for Integrated scRNA-seq Data from Multiple Studies Presenting Them Through a Unified Framework.: PanglaoDB: panglaodb.se/.

PanglaoDB is a database for the scientific community interested in exploration of single cell RNA sequencing experiments from mouse and human. We collect and integrate data from multiple studies and present them through a unified framework.

CellPhoneDB A Repository of Curated Receptors, Ligands and Their Interactions: CellPhoneDB: www.cellphonedb.org.

CellPhoneDB is a publicly available repository of curated receptors, ligands and their interactions. Subunit architecture is included for both ligands and receptors, representing heteromeric complexes accurately. This is crucial, as cell-cell communication relies on multi-subunit protein complexes that go beyond the binary representation used in most databases and studies.

CellMarker A Resource of Cell Markers for Various Cell Types in Tissues of Human and Mouse: CellMarker: biocc.hrbmu.edu.cn/CellMarker/index.jsp.

One of the most fundamental questions in biology is which types of cells form different tissues and organs in a functionally coordinated fashion. Larger-scale single cell sequencing and biology experiment studies are now rapidly opening up new ways to track this question by revealing substantial cell markers for distinguishing different cell types in tissues. Here, we developed the CellMarker databases, aiming to provide a comprehensive and accurate resource of cell markers for various cell types in tissues of human and mouse.

g:Profiler Performing Functional Enrichment Analysis, aka. Over-Representation Analysis (ORA) or Gene Set Enrichment Analysis: g:Profiler: biit.cs.ut.ee/gprofiler/gost.

g:GOSt performs functional enrichment analysis, also known as over-representation analysis (ORA) or gene set enrichment analysis, on input gene list. It maps genes to known functional information sources and detects statistically significantly enriched terms. We regularly retrieve data from Ensembl database and fungi, plants or metazoa specific versions of Ensembl Genomes, and parasite specific data from WormBase ParaSite. In addition to Gene Ontology, we include pathways from KEGG Reactome and WikiPathways; miRNA targets from miRTarBase and regulatory motif matches from TRANSFAC; tissue specificity from Human Protein Atlas; protein complexes from CORUM and human disease phenotypes from Human Phenotype Ontology. g:GOSt supports close to 500 organisms and accepts hundreds of identifier types.

KEGG Kyoto Encyclopedia of Genes and Genomes: KEGG: www.kegg.jp.

KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.

GO The Gene Ontology Resource: GO: geneontology.org.

The Gene Ontology (GO) knowledgebase is the world’s largest source of information on the functions of genes. This knowledge is both human-readable and machine-readable, and is a foundation for computational analysis of large-scale molecular biology and genetics experiments in biomedical research.

GSEA Gene Set Enrichment Analysis: GSEA: www.gsea-msigdb.org.

Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically
significant, concordant differences between two biological states
(e.g. phenotypes).

—————————————————————————————

国外耗材采购网址Link汇总

Biocompare The Buyer’s Guide For Life Scientists: Biocompare: https://www.biocompare.com.

我一般在采购抗体的时候使用这个网站，进入网址后点击Products→Antibody Search，输入靶点名称即可进行搜索。重要的是它可以对多种条件进行筛选，比如Host Species, Reactivity, Clonality等等。

—————————————————————————————

国外生物技术公司Link汇总

Abcam 外文官网 www.abcam.com 中文官网 www.abcam.cn

—————————————————————————————

国内生物技术公司Link汇总

锐博生物 www.ribobio.com
汉恒生物 www.hanbio.net
艾柏森生物 www.abiocenter.com
赛业生物(bilibili) space.bilibili.com/496845537/video